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2017
Máximo, Heros J.; Dalio, Ronaldo J. D.; Rodrigues, Carolina M.; Breton, Michèle C.; Machado, Marcos A.
Reference genes for RT-qPCR analysis in Citrus and Poncirus infected by zoospores of Phytophthora parasitica Journal Article
In: Tropical Plant Pathology 2017 42:2, vol. 42, iss. 2, pp. 76-85, 2017, ISSN: 1983-2052.
Abstract | Links | BibTeX | Tags: Housekeeping genes, Molecular biology, Oomycetes, Plant Pathology
@article{nokey,
title = {Reference genes for RT-qPCR analysis in Citrus and Poncirus infected by zoospores of Phytophthora parasitica},
author = {Heros J. Máximo and Ronaldo J. D. Dalio and Carolina M. Rodrigues and Michèle C. Breton and Marcos A. Machado},
url = {https://link.springer.com/article/10.1007/s40858-017-0134-8},
doi = {10.1007/S40858-017-0134-8},
issn = {1983-2052},
year = {2017},
date = {2017-01-01},
journal = {Tropical Plant Pathology 2017 42:2},
volume = {42},
issue = {2},
pages = {76-85},
publisher = {Springer},
abstract = {Phytophthora species are highly destructive phytopathogens, associated with massive damage in natural ecosystems and agriculture. Citrus production is also affected, mainly by the hemibiothrophic oomycete Phytophthora parasitica, which causes root rot and gummosis. Poncirus trifoliata and Citrus sunki (two rootstocks widely used in citrus orchards) pose a resistance and a susceptible interaction with P. parasitica, respectively, which makes them suitable models to study plant defense mechanisms. Gene expression analysis is a very important tool in this type of study, in particular PCR (RT-qPCR). Hence, it is crucial to use appropriate reference genes for expression normalization. Our aim was to evaluate the stability of several candidate reference genes to determine which set is best suited for normalization in citrus infected with P. parasitica. We evaluated five candidate reference genes selected from the database CitEST. GeNorm and NormFinder algorithms were used to assess the best reference genes. We found that the more stable genes to be used for RT-qPCR analysis in P. trifoliata plants were GAPC2 and F-BOX, while EGIDH and GAPC2 were more suitable to C. sunki. These four genes were found to be excellent normalizers, being stable throughout the infection regardless of pathogen attack or symptom development.},
keywords = {Housekeeping genes, Molecular biology, Oomycetes, Plant Pathology},
pubstate = {published},
tppubtype = {article}
}
Phytophthora species are highly destructive phytopathogens, associated with massive damage in natural ecosystems and agriculture. Citrus production is also affected, mainly by the hemibiothrophic oomycete Phytophthora parasitica, which causes root rot and gummosis. Poncirus trifoliata and Citrus sunki (two rootstocks widely used in citrus orchards) pose a resistance and a susceptible interaction with P. parasitica, respectively, which makes them suitable models to study plant defense mechanisms. Gene expression analysis is a very important tool in this type of study, in particular PCR (RT-qPCR). Hence, it is crucial to use appropriate reference genes for expression normalization. Our aim was to evaluate the stability of several candidate reference genes to determine which set is best suited for normalization in citrus infected with P. parasitica. We evaluated five candidate reference genes selected from the database CitEST. GeNorm and NormFinder algorithms were used to assess the best reference genes. We found that the more stable genes to be used for RT-qPCR analysis in P. trifoliata plants were GAPC2 and F-BOX, while EGIDH and GAPC2 were more suitable to C. sunki. These four genes were found to be excellent normalizers, being stable throughout the infection regardless of pathogen attack or symptom development.
Máximo, Heros J.; Dalio, Ronaldo J. D.; Rodrigues, Carolina M.; Breton, Michèle C.; Machado, Marcos A.
Reference genes for RT-qPCR analysis in Citrus and Poncirus infected by zoospores of Phytophthora parasitica Journal Article
In: Tropical Plant Pathology 2017 42:2, vol. 42, iss. 2, pp. 76-85, 2017, ISSN: 1983-2052.
Abstract | Links | BibTeX | Tags: Housekeeping genes, Molecular biology, Oomycetes, Plant Pathology
@article{nokey,
title = {Reference genes for RT-qPCR analysis in Citrus and Poncirus infected by zoospores of Phytophthora parasitica},
author = {Heros J. Máximo and Ronaldo J. D. Dalio and Carolina M. Rodrigues and Michèle C. Breton and Marcos A. Machado},
url = {https://link.springer.com/article/10.1007/s40858-017-0134-8},
doi = {10.1007/S40858-017-0134-8},
issn = {1983-2052},
year = {2017},
date = {2017-01-01},
journal = {Tropical Plant Pathology 2017 42:2},
volume = {42},
issue = {2},
pages = {76-85},
publisher = {Springer},
abstract = {Phytophthora species are highly destructive phytopathogens, associated with massive damage in natural ecosystems and agriculture. Citrus production is also affected, mainly by the hemibiothrophic oomycete Phytophthora parasitica, which causes root rot and gummosis. Poncirus trifoliata and Citrus sunki (two rootstocks widely used in citrus orchards) pose a resistance and a susceptible interaction with P. parasitica, respectively, which makes them suitable models to study plant defense mechanisms. Gene expression analysis is a very important tool in this type of study, in particular PCR (RT-qPCR). Hence, it is crucial to use appropriate reference genes for expression normalization. Our aim was to evaluate the stability of several candidate reference genes to determine which set is best suited for normalization in citrus infected with P. parasitica. We evaluated five candidate reference genes selected from the database CitEST. GeNorm and NormFinder algorithms were used to assess the best reference genes. We found that the more stable genes to be used for RT-qPCR analysis in P. trifoliata plants were GAPC2 and F-BOX, while EGIDH and GAPC2 were more suitable to C. sunki. These four genes were found to be excellent normalizers, being stable throughout the infection regardless of pathogen attack or symptom development.},
keywords = {Housekeeping genes, Molecular biology, Oomycetes, Plant Pathology},
pubstate = {published},
tppubtype = {article}
}
Phytophthora species are highly destructive phytopathogens, associated with massive damage in natural ecosystems and agriculture. Citrus production is also affected, mainly by the hemibiothrophic oomycete Phytophthora parasitica, which causes root rot and gummosis. Poncirus trifoliata and Citrus sunki (two rootstocks widely used in citrus orchards) pose a resistance and a susceptible interaction with P. parasitica, respectively, which makes them suitable models to study plant defense mechanisms. Gene expression analysis is a very important tool in this type of study, in particular PCR (RT-qPCR). Hence, it is crucial to use appropriate reference genes for expression normalization. Our aim was to evaluate the stability of several candidate reference genes to determine which set is best suited for normalization in citrus infected with P. parasitica. We evaluated five candidate reference genes selected from the database CitEST. GeNorm and NormFinder algorithms were used to assess the best reference genes. We found that the more stable genes to be used for RT-qPCR analysis in P. trifoliata plants were GAPC2 and F-BOX, while EGIDH and GAPC2 were more suitable to C. sunki. These four genes were found to be excellent normalizers, being stable throughout the infection regardless of pathogen attack or symptom development.
Máximo, Heros J.; Dalio, Ronaldo J. D.; Rodrigues, Carolina M.; Breton, Michèle C.; Machado, Marcos A.
Reference genes for RT-qPCR analysis in Citrus and Poncirus infected by zoospores of Phytophthora parasitica Journal Article
In: Tropical Plant Pathology 2017 42:2, vol. 42, iss. 2, pp. 76-85, 2017, ISSN: 1983-2052.
Abstract | Links | BibTeX | Tags: Housekeeping genes, Molecular biology, Oomycetes, Plant Pathology
@article{nokey,
title = {Reference genes for RT-qPCR analysis in Citrus and Poncirus infected by zoospores of Phytophthora parasitica},
author = {Heros J. Máximo and Ronaldo J. D. Dalio and Carolina M. Rodrigues and Michèle C. Breton and Marcos A. Machado},
url = {https://link.springer.com/article/10.1007/s40858-017-0134-8},
doi = {10.1007/S40858-017-0134-8},
issn = {1983-2052},
year = {2017},
date = {2017-01-01},
journal = {Tropical Plant Pathology 2017 42:2},
volume = {42},
issue = {2},
pages = {76-85},
publisher = {Springer},
abstract = {Phytophthora species are highly destructive phytopathogens, associated with massive damage in natural ecosystems and agriculture. Citrus production is also affected, mainly by the hemibiothrophic oomycete Phytophthora parasitica, which causes root rot and gummosis. Poncirus trifoliata and Citrus sunki (two rootstocks widely used in citrus orchards) pose a resistance and a susceptible interaction with P. parasitica, respectively, which makes them suitable models to study plant defense mechanisms. Gene expression analysis is a very important tool in this type of study, in particular PCR (RT-qPCR). Hence, it is crucial to use appropriate reference genes for expression normalization. Our aim was to evaluate the stability of several candidate reference genes to determine which set is best suited for normalization in citrus infected with P. parasitica. We evaluated five candidate reference genes selected from the database CitEST. GeNorm and NormFinder algorithms were used to assess the best reference genes. We found that the more stable genes to be used for RT-qPCR analysis in P. trifoliata plants were GAPC2 and F-BOX, while EGIDH and GAPC2 were more suitable to C. sunki. These four genes were found to be excellent normalizers, being stable throughout the infection regardless of pathogen attack or symptom development.},
keywords = {Housekeeping genes, Molecular biology, Oomycetes, Plant Pathology},
pubstate = {published},
tppubtype = {article}
}
Phytophthora species are highly destructive phytopathogens, associated with massive damage in natural ecosystems and agriculture. Citrus production is also affected, mainly by the hemibiothrophic oomycete Phytophthora parasitica, which causes root rot and gummosis. Poncirus trifoliata and Citrus sunki (two rootstocks widely used in citrus orchards) pose a resistance and a susceptible interaction with P. parasitica, respectively, which makes them suitable models to study plant defense mechanisms. Gene expression analysis is a very important tool in this type of study, in particular PCR (RT-qPCR). Hence, it is crucial to use appropriate reference genes for expression normalization. Our aim was to evaluate the stability of several candidate reference genes to determine which set is best suited for normalization in citrus infected with P. parasitica. We evaluated five candidate reference genes selected from the database CitEST. GeNorm and NormFinder algorithms were used to assess the best reference genes. We found that the more stable genes to be used for RT-qPCR analysis in P. trifoliata plants were GAPC2 and F-BOX, while EGIDH and GAPC2 were more suitable to C. sunki. These four genes were found to be excellent normalizers, being stable throughout the infection regardless of pathogen attack or symptom development.