Estão relacionados às bases de genomas e transcriptomas (RNAseq) sequenciados pelo grupo do INCT Citros.
Essas informações se aplicam à genética desses organismos, bem como ao entendimento das relações entre eles, particularmente nos processos que levam a doenças.
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| Specie | Strain/Variety | Genome | Transcriptome | Sequencing Methodology | Coverage | DB local | DB NCBI | Goals | Reference |
|---|---|---|---|---|---|---|---|---|---|
| Alternaria alternata | no | yes | Illumina MiSeq | 590x | yes | no | Unpublished | ||
| Brevipalpus yothersi | yes | no | Roche (454 GS FLX_) + Illumina (MiSeq) | 42x | no | PRJNA490612 | Full genome | Microbiol Res Announc 8:e01563-18 | |
| Colletotrichum abscissum | Ca142/LGMF1257 | yes | no | Illumina MiSeq | 210x | yes | PRJNA516018 | Comparison between genomes | Phytopathology 2022 |
| Phyllosticat capitalensis | LGMF 01 | yes | yes | Illumina MiSeq | 490x | yes | no | Comparison between genomes | Unpublished |
| Phyllosticata citribraziliensis | LGMF 08 | yes | yes | Illumina MiSeq | 787x | yes | no | Comparison between genomes | Unpublished |
| Phyllosticta capitalensis | LGMF01 | yes | no | Illumina HiSeq | 700x | yes | PRJNA486917 | Comparison between genomes | BMC Genomics 20: 554, 2019 |
| Phyllosticta citricarpa | LGMF06 | yes | no | Illumina HiSeq | 850 x | yes | PRJNA486917 | Comparison between genomes | BMC Genomics 20: 554, 2019 |
| Phyllosticta citricarpa | LGMF 06 | yes | yes | Illumina MiSeq | 484x | yes | no | Comparison between genomes and associated effectors | Unpublished |
| Phytophthora parasitica | IAC_01/95 | yes | no | Illumina | 116x | no | PRJNA205153 | Comparison between genomes | Unpublished |
| Xylella fastidiosa | Several | yes | no | Illumina MiSeq | 81x | no | PRJNA266001 | Comparison between genomes | Phytopathology 2020 |
| Arabidopsis thaliana | Col-0 | no | yes | Illumina HiSeq | - | yes | PRJNA454529 | Arabidopsis/Brevipalpus mite/CiLV-C interaction | Frontiers in Plant Science 9: 1, 2018 and 11: 1, 2020. |
| Poncirus trifoliata | Rubidoux IAC 835 | yes | no | Roche Pyrosequencing | 5x | yes | no | Full genome | Unpublished |
| no | yes | Illumina HiSeq | - | yes | no | miRNA in the interaction with Phytophtora parasitica | Unpublished | ||
| Citrus reticulata | Ponkan IAC 224 | yes | no | Roche Pyrosequencing | 5x | yes | no | Full genome | Unpublished |
| Illumina GA II and Hiseq | 230x | yes | no | Full genome | Unpublished | ||||
| Citrus medica | Cidra Diamante IAC 689 | yes | no | Illumina GA II and Hiseq | 145x | yes | no | Full genome | Unpublished |
| Citrus limonia | Limão Cravo Santa Bárbara IAC 884 | yes | no | Roche Pyrosequencing | 5x | yes | no | Full genome | Unpublished |
| Illumina GA II and Hiseq | 140x | yes | no | Full genome | Unpublished | ||||
| Citrus sinensis | Laranja Pera Rio IAC 154 | yes | no | Illumina GA II and Hiseq | 107x | yes | no | Full genome | Unpublished |
| no | yes | Microarray Niblegen | yes | yes | PRJNA176233 | Sweet orange infected with Ca. L. americanus | BMC Genomics 14, 2013 | ||
| no | yes | Illumina HiSeq | yes | yes | PRJNA261357 | Sweet orange and elicitors | BMC Genomics 16, 2015 | ||
| yes | yes | Illumina HiSeq | Juvenile tissue | In preparation | |||||
| yes | yes | Illumina HiSeq | Adult tissue | In preparation | |||||
| Laranja Hamlin IAC 8 | yes | yes | Illumina HiSeq | Juvenile tissue | In preparation | ||||
| Illumina HiSeq | Full genome | In preparation | |||||||
| yes | yes | Illumina HiSeq | Adult tissue | In preparation | |||||
| Citrus sunki | Tangerina Sunki IAC 200 | no | yes | Illumina HiSeq | - | yes | no | miRNA in the interaction with Phytophtora parasitica | Unpublished |
| Citrus maxima | Toranja Ogami IAC 361 | yes | no | Illumina GA II and Hiseq | 232x | yes | no | Full genome | Unpublished |